CESSHIV-1 database

General information on HIV-1 isolate

# 260

Accession number	U69590
Name	WCIPR clone 12
Subtype	B
Country	USA
Sampling year	1990
Patient	WC1-001

U69590 isolate has foldings of [DIS region] [PBS region] [123nt 3' terminus] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagaccctt ttagtcagtg tggaaaatct ctagcagtgg cgcccgaaca gggacttgaa agcgaaaggg aaaccagagg agctctctcg acgcaggac

Isolates with identical sequences of region:

A04321(#1102) AB485639(#2742) AY835749(#584) CS793683(#3475) CS793684(#1093) D86068(#1094) D86069(#1095) DM461230(#3476) DM461231(#3477) EF363124(#966) K02013(#19) K02083(#70) L28869(#2437) L28873(#2441) L28906(#2474) U24466(#2380) U24468(#2488) U24469(#2489) U24470(#2490) U24472(#2492) U24473(#2493) U24474(#2494) U24478(#2495) U24479(#2496) U24480(#2497) U69591(#261) U69593(#263) U80519(#2538)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy