CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 1431
Accession number DQ167215
Name EST2002_1169
SubtypeCRF32_06A1
CountryEstonia
Sampling year 2002
Patient1169

DQ167215 isolate has foldings of [DIS region] [PBS region] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagaaacac tttagacagt gta-aaaatct ctagcagtgg cgcccgaaca gggacttgaa aacgaaagtt aatagggact cgaaagcgaa agtt---ccagag aagttctctc gacgcaggac

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

STCU 2008-2010
Institute of Molecular Biology and Genetics 2008-2012