CESSHIV-1 database

General information on HIV-1 isolate

# 1236

Accession number	DQ275658
Name	03ZAPS130MB1
Subtype	C
Country	South Africa
Sampling year	2003
Patient	130MB

DQ275658 isolate has foldings of [DIS region] [PBS region] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagaccctt tgaggtagtg tggaaaatct ctagcagtgg cgcccgaaca gggacccgaa agcgaaagta agaccagaga agatctctcg acgcaagac

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy