CESSHIV-1 database

General information on HIV-1 isolate

# 1236

Accession number	DQ275658
Name	03ZAPS130MB1
Subtype	C
Country	South Africa
Sampling year	2003
Patient	130MB

DQ275658 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

agactcggct tgctgaagtg cactcggcaa gaggcgagag -cggcggctgg tgagtacgcc aatttttatt tgactagcgg aggctagaag gagaga

Isolates with identical sequences of region:

DQ275645(#1223)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy