CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 750
Accession number DQ358810
Name 02BR013
SubtypeB
CountryBrazil
Sampling year 2002
PatientBR013

DQ358810 isolate has foldings of [DIS region] [PBS region] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctcgtata ctagagatcc ctcagacc-tt ttagtcagtg tggaaaaatc tctagcagtg gcgcgcgaac agggactaga aagcgaaagt agacccagag gagctctctc ggacgcagga c

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

STCU 2008-2010
Institute of Molecular Biology and Genetics 2008-2012