CESSHIV-1 database

General information on HIV-1 isolate

# 694

Accession number	DQ396372
Name	05ZASK243B1
Subtype	C
Country	South Africa
Sampling year	2005
Patient	243B1

DQ396372 isolate has foldings of [DIS region] [PBS region] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtgg ctctggtaac tagagatccc tcagaccatt ttggt-agtgt ggaaaatctc tagcagtggc gcccgaacag ggacttgaaa gcgaaagtaa gaccagagga gatctctcga cgcagggc

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy