CESSHIV-1 database

General information on HIV-1 isolate

# 694

Accession number	DQ396372
Name	05ZASK243B1
Subtype	C
Country	South Africa
Sampling year	2005
Patient	243B1

DQ396372 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

gggctcggct tgctgaagtg cactcggcaa gaggcgagag -cggcggctgg tgagtacgcc aatttttatt tgactagcgg aggctagaag gagaga

Isolates with identical sequences of region:

DQ164111(#548) DQ351237(#636)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy