CESSHIV-1 database

General information on HIV-1 isolate

# 636

Accession number	DQ351237
Name	03ZASK113B1
Subtype	C
Country	South Africa
Sampling year	2003
Patient	113B1

DQ351237 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

gggctcggct tgctgaagtg cactcggcaa gaggcgagag -cggcggctgg tgagtacgcc aatttttatt tgactagcgg aggctagaag gagaga

Isolates with identical sequences of region:

DQ164111(#548) DQ396372(#694)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy