CESSHIV-1 database

General information on HIV-1 isolate

# 719

Accession number	DQ396397
Name	04ZASK201B1
Subtype	C
Country	South Africa
Sampling year	2004
Patient	201B1

DQ396397 isolate has foldings of [DIS region] [PBS region] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtgg ctctggtaac tagagatccc tcagaccaac tttggtagtg tggaaaatct ctagcagtgg cgcccgaaca gggacccgaa agcgaaagta agaccagagg agatctctcg acgcaggac

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy