CESSHIV-1 database

General information on HIV-1 isolate

# 719

Accession number	DQ396397
Name	04ZASK201B1
Subtype	C
Country	South Africa
Sampling year	2004
Patient	201B1

DQ396397 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagtg cactcggcaa gaggcgagag -cggcgactgg tgagtacgcc aatttttatt tgactagcgg aggctagaag gagaga

Isolates with identical sequences of region:

AM076862(#1564) AM076877(#1579) AY772690(#403) AY772699(#412) AY901975(#438) DQ056408(#478) DQ351224(#623) DQ369990(#656) DQ396379(#701) DQ445637(#684) EU293445(#1205) U46016(#17)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy