CESSHIV-1 database

General information on HIV-1 isolate

# 701

Accession number	DQ396379
Name	03ZAPS11MB2
Subtype	C
Country	South Africa
Sampling year	2003
Patient	11MB2

DQ396379 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagtg cactcggcaa gaggcgagag -cggcgactgg tgagtacgcc aatttttatt tgactagcgg aggctagaag gagaga

Isolates with identical sequences of region:

AM076862(#1564) AM076877(#1579) AY772690(#403) AY772699(#412) AY901975(#438) DQ056408(#478) DQ351224(#623) DQ369990(#656) DQ396397(#719) DQ445637(#684) EU293445(#1205) U46016(#17)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy