CESSHIV-1 database

General information on HIV-1 isolate

# 1564

Accession number	AM076862
Name	PG188_11
Subtype	C
Country	Mozambique
Sampling year	2003
Patient	PG188

AM076862 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagtg cactcggcaa gaggcgagag -cggcgactgg tgagtacgcc aatttttatt tgactagcgg aggctagaag gagaga

Isolates with identical sequences of region:

AM076877(#1579) AY772690(#403) AY772699(#412) AY901975(#438) DQ056408(#478) DQ351224(#623) DQ369990(#656) DQ396379(#701) DQ396397(#719) DQ445637(#684) EU293445(#1205) U46016(#17)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy