CESSHIV-1 database

General information on HIV-1 isolate

# 701

Accession number	DQ396379
Name	03ZAPS11MB2
Subtype	C
Country	South Africa
Sampling year	2003
Patient	11MB2

DQ396379 isolate has foldings of [DIS region] [PBS region] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagaccctt tgtggtagtg tggaaaatct ctagcagtgg cgcccgaaca gggacttgaa agcgaaagta agaccagagg agatctctcg acgcaggac

Isolates with identical sequences of region:

AF405203(#1986) AM076887(#1589) AM076889(#1591) AM076890(#1592) AY228556(#311) AY878054(#512) AY901979(#442) AY932726(#2034) DQ011170(#460) DQ056407(#477)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy