CESSHIV-1 database

General information on HIV-1 isolate

# 311

Accession number	AY228556
Name	99ZATM10
Subtype	C
Country	South Africa
Sampling year	1999
Patient	TM10

AY228556 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagaccctt tgtggtagtg tggaaaatct ctagcagtgg cgcccgaaca gggacttgaa agcgaaagta agaccagagg agatctctcg acgcaggac

Isolates with identical sequences of region:

AF405203(#1986) AM076887(#1589) AM076889(#1591) AM076890(#1592) AY878054(#512) AY901979(#442) AY932726(#2034) DQ011170(#460) DQ056407(#477) DQ396379(#701)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy