CESSHIV-1 database

General information on HIV-1 isolate

# 442

Accession number	AY901979
Name	04ZASK163B1
Subtype	C
Country	South Africa
Sampling year	2004
Patient	SK-163

AY901979 isolate has foldings of [DIS region] [PBS region] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagaccctt tgtggtagtg tggaaaatct ctagcagtgg cgcccgaaca gggacttgaa agcgaaagta agaccagagg agatctctcg acgcaggac

Isolates with identical sequences of region:

AF405203(#1986) AM076887(#1589) AM076889(#1591) AM076890(#1592) AY228556(#311) AY878054(#512) AY932726(#2034) DQ011170(#460) DQ056407(#477) DQ396379(#701)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy