CESSHIV-1 database

General information on HIV-1 isolate

# 1814

Accession number	EU047611
Name	06CSR5_3099
Subtype	B
Country	South Korea (USA)
Sampling year	2006
Patient	HP-21(CSR)

EU047611 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagacactt ttagtcagtg tggaaaatct ctagcagtgg cgcccgaaca gggacgcgaa agcgaaagga aaaccagagg agctctctcg acgcaggac

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy