CESSHIV-1 database

General information on HIV-1 isolate

# 1871

Accession number	EU047677
Name	07YJN2_3212
Subtype	B Korean
Country	South Korea
Sampling year	2007
Patient	YJN

EU047677 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagaccctt ttagtcagtg tggaaaatct ctagcagtgg cgcccgaaca gggacttgaa aacgaaagta gaaccagagg agctctctcg acgcaggac

Isolates with identical sequences of region:

EF370249(#1727) EF370259(#1731) EF370342(#1781) EU047688(#1884)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy