CESSHIV-1 database

General information on HIV-1 isolate

# 1888

Accession number	EU047693
Name	01HSJ_3145_3496
Subtype	B
Country	South Korea
Sampling year	2001
Patient	HSJ

EU047693 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagacactt ttagtcagtg tggaaaatct ctagcagtgg cgcccgaaca gggacccgaa agcgaaagga aaaccagagg agctctctcg acgcaggac

Isolates with identical sequences of region:

EU047604(#1624)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy