CESSHIV-1 database

General information on HIV-1 isolate

# 1052

Accession number	EU735538
Name	04BRRJ115
Subtype	CRF40_BF
Country	Brazil
Sampling year	2004

EU735538 isolate has foldings of [DIS region] [PBS region] [123nt 3' terminus] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagaccatt ttagtcagtg tggaaaatct ctagcagtgg cgcccgaaca gggacgcgaa agcgaaagta gaaccagagg agatctctcg acgcaggac

Isolates with identical sequences of region:

GQ290462(#3201) GU595154(#3323)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy