CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 1193
Accession number EU786680
Name ES X2231 (B)
SubtypeB
CountrySpain
Sampling year 2007
Patient2231

EU786680 isolate has foldings of [DIS region] [PBS region] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagaccact ttagtccgtg tggaaaatct ctagcagtgg cgcccgaaca gggacctgaa agtgaaagag gaaccagagg agctctctcg acgcaggac

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy