CESSHIV-1 database

General information on HIV-1 isolate

# 3479

Accession number	FB675252
Name	YBF30_patent
Subtype	Group N
Country	France
Submitted to NCBI	1998
Patient	30
Comments	Patent

FB675252 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing PBS domain

The primary sequence:

cattcggtaa ctctggtacc tagagaatcc ctcagaccat ct-agactgag tgaaaaatct ctagcagtgg cgcccgaaca gggacttagt tgaaaacgaa agtagaaccg gaggctgaat ctctcgacgc aggac

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy