CESSHIV-1 database

General information on HIV-1 isolate

# 3479

Accession number	FB675252
Name	YBF30_patent
Subtype	Group N
Country	France
Submitted to NCBI	1998
Patient	30
Comments	Patent

FB675252 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct cgttg--gtgca cacagcgaga ggcgaggcgg cgg-aagtg-tg agtacgca----at tttgactggc ggtggccaga aagtaggaga ga

Isolates with identical sequences of region:

AJ006022(#226) AJ271370(#402) DQ017383(#668) FB675251(#3478) GQ324958(#3204) GQ324959(#3203)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy