CESSHIV-1 database

General information on HIV-1 isolate

# 402

Accession number	AJ271370
Name	CM_YBF106
Subtype	Group N
Country	Cameroon
Sampling year	1997
Patient	106

AJ271370 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct cgttg--gtgca cacagcgaga ggcgaggcgg cgg-aagtg-tg agtacgca----at tttgactggc ggtggccaga aagtaggaga ga

Isolates with identical sequences of region:

AJ006022(#226) DQ017383(#668) FB675251(#3478) FB675252(#3479) GQ324958(#3204) GQ324959(#3203)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy