CESSHIV-1 database

General information on HIV-1 isolate

# 402

Accession number	AJ271370
Name	CM_YBF106
Subtype	Group N
Country	Cameroon
Sampling year	1997
Patient	106

AJ271370 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] .

The region encompassing Core poly(A) site

The primary sequence:

ctgggtctct cttgttagac cagattagag cctgggagct ctctggctag c-agggaaccc actgcttaag cctcaataaa gcttgccttg agagcta-aag tggtgtgtgc ccatccattc ggtaactctg gtac

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy