CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 1904
Accession number FJ389363
Name 178_15
SubtypeG
CountryCameroon
Sampling year 2004
Patient178_15

FJ389363 isolate has foldings of [DIS region] [PBS region] [123nt 3' terminus] .

The region encompassing PBS domain

The primary sequence:

tgttgtgcga ctctggtaac tagagatccc tcagaccact ctagatagtg ta-aaaatctc tagcagtggc gcccgaacag ggacttgaaa acgaaagtta acagggactc gaaagcggaa gtt---ccagaga agttctctcg acgcaggac

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

STCU 2008-2010
Institute of Molecular Biology and Genetics 2008-2012