CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 1911
Accession number FJ614887
Name 08MHR1_4563
SubtypeCRF02_AG
CountrySouth Korea
Sampling year 2008
PatientMHR

FJ614887 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE, TAR, polyA] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagaccaat ctagacttgg ta-aaaatctc tagcagtggc gcccgaacag ggaccggaag ttaataggga ctcgaaagcg aaagtt---ccag agaagctctc tcgacgcagg gac

Isolates with identical sequences of region:

FJ614886(#2510)

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

STCU 2008-2010
Institute of Molecular Biology and Genetics 2008-2012