CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 1911
Accession number FJ614887
Name 08MHR1_4563
SubtypeCRF02_AG
CountrySouth Korea
Sampling year 2008
PatientMHR

FJ614887 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE, TAR, polyA] .

The region encompassing USE, TAR, polyA

The primary sequence:

agcagctgct tctcgcttgt actgggtctc tcttgctaga ccagatttga gcctgggagc tctctgacta gcaggggaac ccactgctta agcctcaata aagcttgcct tgagtgcttt aagtagtgt

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy