CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 3299
Accession number FJ614989
Name 00NYR1_4197
SubtypeCRF02_AG
CountrySouth Korea
Sampling year 2000
PatientNYR

FJ614989 isolate has foldings of [DIS region] [PBS region] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagaccact ctagactgtg taaaaaatct ctagcagtgg cgcccgaaca gggaccggaa gttaataggg actcgaaagc gaaagttcca gagaagatct ctcgacgcag ggac

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

STCU 2008-2010
Institute of Molecular Biology and Genetics 2008-2012