CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 2764
Accession number FM877780
Name 02CD_KS069
SubtypeCRF26_AU
CountryDRC
Sampling year 2002
PatientKS069

FM877780 isolate has foldings of [DIS region] [PBS region] .

The region encompassing PBS domain

The primary sequence:

tgttgattga ctctggtaac tagagatccc tcagactact gaaggtagta taaaaaatct ttaccagggg cgcccaacca gggcctttaa agcgaaagta aaagggactc gaaagcggaa gtt---ccagaga agttctctcg acgcaggac

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

STCU 2008-2010
Institute of Molecular Biology and Genetics 2008-2012