CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 3205
Accession number GQ324962
Name U14296
SubtypeGroup N
CountryCameroon
Sampling year 2006
PatientU14296

GQ324962 isolate has foldings of [DIS region] [PBS region] .

The region encompassing PBS domain

The primary sequence:

cattcggtaa ctctggtacc tagagatccc tcagacyact t-agactgagt gaaaaatctc tagcagtggc gcccgaacag ggacttgaaa rcgaaagtag aaccggaggc tgaatctctc gacgcaggac

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy