CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 3840
Accession number GU362881
Name P2149_3
SubtypeB
CountrySpain
Sampling year 2009
PatientP2149

GU362881 isolate has foldings of [DIS region] [PBS region] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagaccatt t-agtcagtgt ggaaaaatct ctagcagtgg cgcccgaaca gggacttgaa agcgaaagta aaaccagagg agaactctcg acgcaggac

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

STCU 2008-2010
Institute of Molecular Biology and Genetics 2008-2012