CESSHIV-1 database

General information on HIV-1 isolate

# 3316

Accession number	HM100716
Name	92BR023
Subtype	BC
Country	Brazil
Sampling year	1992

HM100716 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagacacct tttgtcagtg tggaaaatct ctagcagtgg cgcccgaaca gggacttgaa agcgaaagta agaccagagg agatctctcg acgcaggac

Isolates with identical sequences of region:

AF254719(#1507) AY932703(#2173) U51282(#2502)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy