CESSHIV-1 database

General information on HIV-1 isolate

# 3316

Accession number	HM100716
Name	92BR023
Subtype	BC
Country	Brazil
Sampling year	1992

HM100716 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagtg cactcggcaa gaggcgagag -cggcgactgg tgagtacgcc atttttattt gactagcgga ggctagaagg agaga

Isolates with identical sequences of region:

AF286228(#101) AY727523(#418) DQ369987(#653) EU448296(#1045)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy