CESSHIV-1 database

General information on HIV-1 isolate

# 653

Accession number	DQ369987
Name	03ZAPS052MB1
Subtype	C
Country	South Africa
Sampling year	2003
Patient	052MB

DQ369987 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagtg cactcggcaa gaggcgagag -cggcgactgg tgagtacgcc atttttattt gactagcgga ggctagaagg agaga

Isolates with identical sequences of region:

AF286228(#101) AY727523(#418) EU448296(#1045) HM100716(#3316)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy