CESSHIV-1 database

General information on HIV-1 isolate

# 101

Accession number	AF286228
Name	98BR004
Subtype	C
Country	Brazil
Sampling year	1998
Patient	BR004c

AF286228 isolate has foldings of [DIS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagtg cactcggcaa gaggcgagag -cggcgactgg tgagtacgcc atttttattt gactagcgga ggctagaagg agaga

Isolates with identical sequences of region:

AY727523(#418) DQ369987(#653) EU448296(#1045) HM100716(#3316)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy