CESSHIV-1 database

General information on HIV-1 isolate

# 2501

Accession number	U43096
Name	D31
Subtype	B
Country	Germany
Sampling year	1986
Patient	D31

U43096 isolate has foldings of [DIS region] [PBS region] [123nt 3' terminus] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagaccctt ttagtcagtg tggaaaatct ctagcagtgg cgcccgaaca gggacttgaa agtgaaagta agaccagagg agctctctcg acgcaggac

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy