CESSHIV-1 database

General information on HIV-1 isolate

# 2501

Accession number	U43096
Name	D31
Subtype	B
Country	Germany
Sampling year	1986
Patient	D31

U43096 isolate has foldings of [DIS region] [PBS region] [123nt 3' terminus] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagcg cgcacagcaa gaggcgaggg gcggcgactg gtgagtacgc caaaaatttt gactagcgga ggctagaagg agaga

Isolates with identical sequences of region:

AY508141(#3532) AY856964(#1597) AY857063(#1637) EF178328(#1615) EF178426(#1707) EF514707(#1017) EF514708(#1018) FJ195089(#1201) U89865(#2598) Z11530(#2600)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy