CESSHIV-1 database

General information on HIV-1 isolate

# 2600

Accession number	Z11530
Name	F12CG
Subtype	B
Country	Italy (France)
Submitted to NCBI	1991
Patient	(LAI)

Z11530 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagcg cgcacagcaa gaggcgaggg gcggcgactg gtgagtacgc caaaaatttt gactagcgga ggctagaagg agaga

Isolates with identical sequences of region:

AY508141(#3532) AY856964(#1597) AY857063(#1637) EF178328(#1615) EF178426(#1707) EF514707(#1017) EF514708(#1018) FJ195089(#1201) U43096(#2501) U89865(#2598)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy