CESSHIV-1 database

General information on HIV-1 isolate

# 2600

Accession number	Z11530
Name	F12CG
Subtype	B
Country	Italy (France)
Submitted to NCBI	1991
Patient	(LAI)

Z11530 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE, TAR, polyA

The primary sequence:

agcagctgct ttttgcctgt tctgggtctc tctggttaga ccagatctga gcctgggagc tctctggcta actagggaac ccactgctta agcctcaata aagcttgcct tgagtgactt tcaagtagtg t

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy