CESSHIV-1 database

General information on HIV-1 isolate

# 2561

Accession number	U81456
Name	VE3NEF
Subtype	B
Country	Venezuela
Sampling year	1991
Patient	3

U81456 isolate has foldings of [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagaccctt ttagtcagtg tggaaaatct ctagcagtgg cgcccgaaca gggacttgaa agcgaaagta gaaccagagg agctctctcg acgcaggac

Isolates with identical sequences of region:

DQ295192(#569) EF370222(#1717) EF370308(#1756) EF370309(#1757) EF370310(#1758) EF370313(#1761) EF370319(#1764) EF370362(#1794) EU047619(#1821) EU047644(#1842) EU047681(#1877) EU735540(#1054) GU362886(#3845) U34603(#33)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy