CESSHIV-1 database

General information on HIV-1 isolate

# 1054

Accession number	EU735540
Name	04BRSQ46
Subtype	CRF40_BF
Country	Brazil
Sampling year	2004
Patient	BRSQ46

EU735540 isolate has foldings of [DIS region] [PBS region] [123nt 3' terminus] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagaccctt ttagtcagtg tggaaaatct ctagcagtgg cgcccgaaca gggacttgaa agcgaaagta gaaccagagg agctctctcg acgcaggac

Isolates with identical sequences of region:

DQ295192(#569) EF370222(#1717) EF370308(#1756) EF370309(#1757) EF370310(#1758) EF370313(#1761) EF370319(#1764) EF370362(#1794) EU047619(#1821) EU047644(#1842) EU047681(#1877) GU362886(#3845) U34603(#33) U81456(#2561)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy