CESSHIV-1 database

General information on HIV-1 isolate

# 1054

Accession number	EU735540
Name	04BRSQ46
Subtype	CRF40_BF
Country	Brazil
Sampling year	2004
Patient	BRSQ46

EU735540 isolate has foldings of [DIS region] [PBS region] [123nt 3' terminus] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaaagc gcgctcggca agaggcgagg ggcggcgact ggtgagtacg ccaaaaataa attttgacta gcggaggcta gaaggagaga 

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy