CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 1054
Accession number EU735540
Name 04BRSQ46
SubtypeCRF40_BF
CountryBrazil
Sampling year 2004
PatientBRSQ46

EU735540 isolate has foldings of [DIS region] [PBS region] [123nt 3' terminus] .

The region encompassing 123 nt 3' terminus

The primary sequence:

cactgcttaa gcctcaataa agcttgcctt gagtgcttca actagtgtgt gcccgtctgt tgtgtgactc tggtaactag agatccctca gaccctttta gtcagtgtgg aaaatctcta gca

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

STCU 2008-2010
Institute of Molecular Biology and Genetics 2008-2012