CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 947
Accession number AB286857
Name p03GH182AG34
SubtypeCRF02_AG
CountryGhana
Sampling year 2003
Patient182

AB286857 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing Core poly(A) site

The primary sequence:

ctgggtctct cttgctagac cagatttgag cctgggagct ctctgactag caggagaacc cactgcttaa gcctcaataa aagcttgcct tgagtgctta aagtagtgtg tgcccgtctg ttgtgtgact ctggtaa

Isolates with identical sequences of region:

AB286858(#948)

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy