CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 947
Accession number AB286857
Name p03GH182AG34
SubtypeCRF02_AG
CountryGhana
Sampling year 2003
Patient182

AB286857 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing 227 nt 3' terminus

The primary sequence:

ctaaccctca gatgctgcat ataagcagct gcttctcgct tgtactgggt ctctcttgct agaccagatt tgagcctggg agctctctga ctagcaggag aacccactgc ttaagcctca ataaaagctt gccttgagtg cttaaagtag tgtgtgcccg tctgttgtgt gactctggta actagagatc cctcagacca ctttactcag tgta-aaaatc tctagca

Isolates with identical sequences of region:

AB286858(#948)

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

STCU 2008-2010
Institute of Molecular Biology and Genetics 2008-2012