CESSHIV-1 database

General information on HIV-1 isolate

# 1075

Accession number	AF538302
Name	1181
Subtype	B
Country	Australia
Sampling year	1999
Patient	1181

AF538302 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing Core poly(A) site

The primary sequence:

ctgggtctct ctggttagac cagatctgag cctgggagct ctctggctag ctagggaacc cactgcttaa gcctcaataa agcttgcctt gagtgcttca agtagtgtgt gcccgtctgt tgtgtgactc tggtag

Isolates with identical sequences of region:

EF370350(#1786) L28889(#2457) U39362(#1101)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy