CESSHIV-1 database

General information on HIV-1 isolate

# 1075

Accession number	AF538302
Name	1181
Subtype	B
Country	Australia
Sampling year	1999
Patient	1181

AF538302 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE domain, TAR, polyA

The primary sequence:

cgagccctca gatgctgcat ataagcagct gctttctgcc tgtactgggt ctctctggtt agaccagatc tgagcctggg agctctctgg ctagctaggg aacccactgc ttaagcctca ataaagcttg ccttgagtgc ttcaagtagt gt

Isolates with identical sequences of region:

AB480695(#2720) DQ287286(#2987) DQ287287(#2988) EF370332(#1775) EF370387(#1803) EU047684(#1880) EU047696(#2275) EU047700(#1891) U37270(#2500)

CESSHIV-1 DATABASE

General information on HIV-1 isolate

The region encompassing USE domain, TAR, polyA

The primary sequence:

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy