CESSHIV-1 database

General information on HIV-1 isolate

# 1995

Accession number	AY610963
Name	99SP13397
Subtype	F
Country	Spain (Argentina)
Sampling year	1999
Patient	13397

AY610963 isolate has foldings of [Core poly(A) site] [USE domain, TAR, polyA] [USE region] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing Core poly(A) site

The primary sequence:

ctgggtctct ctagttagac cagatctgag cctgggagct ctctggctag ctagggaacc cactgcttaa gcctcaataa agcttgcctt gagtgcttca agtagtgtgt gcccgtctgt tgtgtgactc tggtaa

Isolates with identical sequences of region:

AB221125(#732) AB221126(#733) AB485664(#2755) AB485665(#2756) U80511(#2530)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy