CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 1995
Accession number AY610963
Name 99SP13397
SubtypeF
CountrySpain (Argentina)
Sampling year 1999
Patient13397

AY610963 isolate has foldings of [Core poly(A) site] [USE domain, TAR, polyA] [USE region] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE region

The primary sequence:

actggggagt ggcaagccct cagatgctgc atataagcag ctgctttttg cctgtactgg gtctctctag ttagaccaga tctgagcctg ggagctctct ggctagctag ggaacccact gcttaagcct caataaagct tgccttgagt gcttcaagta gtgt

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

STCU 2008-2010
Institute of Molecular Biology and Genetics 2008-2012