CESSHIV-1 database

General information on HIV-1 isolate

# 2043

Accession number	AY610983
Name	03SP106196
Subtype	G
Country	Spain (Nigeria)
Sampling year	2003

AY610983 isolate has foldings of [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing Core poly(A) site

The primary sequence:

ctgggtctct cttgctagac cagatttgag cctgggagct ctctgactag caggggaacc cactgcttaa gcctcaataa agcttgcctt gagtgcttca agtagtgtgt gcccgtctgt tgtgtgactc tggtaa

Isolates with identical sequences of region:

AB231896(#737) AF196748(#1314) AY612637(#954) FJ614945(#2362) FJ614964(#2386)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy